Page Comparison

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$ mpirun -np 128 dynamic papain 1000 2.0 1.0 2 300 
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$ mpirun -np 128 dynamic protease_dimer 1000 2.0 1.0 2 300 
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$ mpirun -np 128 ../bin/dynamic stmv 100 2.0 1.0 2 300 
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Submit to us the stdout and the arc log file (we will send details later how to submit).Submission:

Brief explanation of how Pennant was configured, compiled and deployed
Build script and Makefile
stdout, .arc files

3. Visualisation  

Run the papain and protease_dimer benchmarks with the following input parameters, steps=10000 and sf=0.1

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