Overview
Quantum ESPRESSO (QE) Is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.
Downloading and compiling QE
wget https://www.quantum-espresso.org/rdm-download/488/v7-1/2d5cbaa760022a30a83d648217f89560/qe-7.1-ReleasePack.tar.gz
tar xfp qe-7.1-ReleasePack.tar.gz
cd qe-7.1
module load intel/2022.1.2
module load compiler/2022.1.0
MPI=impi-2021.6.0
MPI=hpcx-2.12.0
module load $(echo $MPI | sed -e "s/\-/\//")
if [[ "$MPI" =~ impi ]]; then
COMP="CC=mpiicc CXX=mpiicpc FC=mpiifort F90=mpiifort MPIF90=mpiifort"
SCA="--with-scalapack=intel"
elif [[ "$MPI" =~ hpcx ]]; then
export OMPI_MPICC=icc
export OMPI_MPICXX=icpc
export OMPI_MPIFC=ifort
export OMPI_MPIF90=ifort
COMP="CC=mpicc CXX=mpicxx FC=mpif90 F90=mpif90"
fi
BASE=$PWD
INSDIR=$BASE/../qe-7.1-$MPI
./configure --enable-parallel --prefix=$INSDIR --enable-openmp \
CFLAGS=" -O3 -xCORE-AVX2 " \
FCFLAGS=" -O3 -xCORE-AVX2 " \
F90FLAGS="-O3 -xCORE-AVX2 " \
$SCA $COMP
make -j 32
make installgi
Running QE
Download QE benchmarks
git clone https://github.com/QEF/benchmarks.git
Practice with one of the small benchmarks called “AUSURF112”
cd benchmarks/AUSURF112 mpirun -np <NPROC> <MPI FLAGS> pw.x -inp ausurf.in
Sample output
mpirun -np 160 -x UCX_NET_DEVICES=mlx5_0:1 -x UCX_LOG_LEVEL=error pw.x -inp ausurf.in
Program PWSCF v.7.1 starts on 12Sep2022 at 20:12:15
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
"P. Giannozzi et al., J. Phys.:Condens. Matter 29 465901 (2017);
"P. Giannozzi et al., J. Chem. Phys. 152 154105 (2020);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 160 processors
MPI processes distributed on 4 nodes
166131 MiB available memory on the printing compute node when the environment starts
Reading input from ausurf.in
Warning: card &CELL ignored
Warning: card CELL_DYNAMICS = 'NONE', ignored
Warning: card / ignored
Current dimensions of program PWSCF are:
Max number of different atomic species (ntypx) = 10
Max number of k-points (npk) = 40000
Max angular momentum in pseudopotentials (lmaxx) = 4
...
General routines
calbec : 21.09s CPU 22.57s WALL ( 168 calls)
fft : 1.25s CPU 1.45s WALL ( 296 calls)
ffts : 0.09s CPU 0.12s WALL ( 44 calls)
fftw : 40.23s CPU 40.97s WALL ( 100076 calls)
interpolate : 0.11s CPU 0.15s WALL ( 22 calls)
Parallel routines
PWSCF : 3m27.78s CPU 3m58.71s WALL
This run was terminated on: 20:16:14 12Sep2022
=------------------------------------------------------------------------------=
JOB DONE.
=------------------------------------------------------------------------------=
We will look for the final wallclock time (WALL).
Task and submission
Use QE 7.1 for the benchamarks:
Profile the given input (click here), the input will be available by Jan 2023
Use any of the remote clusters to run an MPI profile (such as IPM profile or any other profiler) over 4 nodes, full PPN to profile the given input.Submit the profile as PDF to the team's folder.
Add to your presentation the 3 main MPI calls that are being used plus the MPI time being used.
Run the QE with the given input on both PSC bridges-2 and FAU Fritz CPU clusters, and submit the results to the teams folder.
Bonus task - run QE on the FAU Alex cluster using A100 GPU partition. Use only 4 GPUs for the run. Submit the results to the team's folder.
Submission and Presentation:
- Submit all the build scripts, standard output, logs and run scripts to the team’s folder.
- No need to submit the output data or source codes.
- Prepare slides for the team’s interview based on your work for this application.
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