Overview
The ICTP Regional Climate Model (RegCM), originally developed at the National Center for Atmospheric Research (NCAR), is maintained in the Earth System Physics (ESP) section of the ICTP. The latest version includes major upgrades in the structure of the code and its pre- and post- processors, along with the inclusion of some new physics parameterizations.
The model is flexible, portable and easy to use. It can be applied to any region of the World, with grid spacing of up to about 3 km, and for a wide range of studies, from process studies to paleo climate and future climate simulation.
The RegCM application is a state of the art limited are Regional Climate Model implementing the physical solution to the atmosphere part of an Earth System Model by solving the primitive Navier-Stokes partial differential equation by using finite difference methods for the dynamics. Multiple physics packages are added to compute the terms parametrized in the used equations, providing to the user a configurable set of options giving her the opportunity to best represent in the model the area of interest.
For more details about RegCM see the model reference descriptive paper.
The model source code is available under the GPLv3 license at:
Note: The page may be changed until the competition stats, maybe sure to follow up until the opening ceremony.
Building and Running example
The model code is written in Fortran programming language using features up to the 2008 revision of the standard, and thus to compile the model a working Fortran compiler is required, along with the GNU make and the autotools (autoconf/automake/libtool) to create the configure script.
The required libraries are:
MPI - Any MPI will do. Most users would pick the OpenMPI at https://www.open-mpi.org/
The procedure to obtain the code is straightforward using the git tool:
git clone https://github.com/ICTP/RegCM.git
For the ISC24, the participants are requested to switch to the target branch:
cd RegCM git checkout ISC24
Once the model is on disk, the user should create the configure script:
autoreconf -f -i
The above command is also contained in a bootstrap.sh script, which has in comment other possible options to use if the autotools are in a non standard path.
The created configure script contains various options to conditionally activate some part of the code, provide different I/O options or optimize for some HPC platforms the ICTP has had access to in the past years.
Not all the legacy platforms/compilers combination are anymore relevant, supported or even tested if the ICTP has not access to them.
Set the path to point your NetCDF installation in order to avoid from using another NetCDF version.
export PATH=<path to netcdf>/bin:$PATH
To configure the build system using the GNU make program should be enough on most systems to just type in:
./configure
The configure script will (hopefully) find a working combination of Fortran compiler and libraries compiled with it for the above required requisites. If the required libraries are not installed on the system, but the user has access to the working compiler toolchain, an example script to download and install in the USER accessible directories the netCDF and OpenMPI is provided in:
./Tools/Scripts/prereq_install.sh
The user can modify it to mirror what is available on the target system.
To compile model executables and copy them in the bin directory, if the GNU make program is in the path, it is enough to
make version make install
For the ISC24 competition, the build system is configured to make the RCEMIP model. This setting will initialize a prescribed initial vertical profile simulation with periodic boundary conditions, that will be used to evaluate the model in the ensemble Radiative-Convective Equilbrium Model Intercomparison Project. In this framework, the model is run in an idealized setting using a prescribed convection permitting configuration over an ocean box domain. The selected configuration it is very much stressing the dynamical core, the radiation package, the model micro-physics and the turbulence parameterization of the boundary layer over the ocean.
Once the compilation is complete, the model executable files can by default be found under the bin directory. Only the regcmMPIRCEMIP executable will be required for the competition.
The user needs two input text files, which can be found in the Testing directory.
In the following, we will identify the model source code root directory (where the configure is) with the shell variable REGCM_ROOT.
To run the model, the standard procedure is to create a running directory:
mkdir run && cd run
possibly on a convenient I/O system partition with high throughput. The user must then link/copy some files in the run directory:
ln -sf $REGCM_ROOT/bin/regcmMPIRCEMIP . cp $REGCM_ROOT/Testing/isc24.in . cp $REGCM_ROOT/Testing/rcemip.in profile.in mkdir output
To run the model, the user needs to invoke the executable using mpirun providing as argument the name of the namelist file used for the competition:
mpirun ./regcmMPIRCEMIP isc24.in
While running, the model will produce diagnostic text on the standard output. The below is an example relative to a model test run on an ICTP Intel Core i7-8700 CPU @ 3.20GHz desktop computer with 6 cores:
This is RegCM development version
GIT Revision: ISC24 compiled at: data : Oct 13 2023 time: 17:15:36
: this run start at : 2023-10-16 12:32:24+0200
: it is submitted by : graziano
: it is running on : desktop-123.ictp.it
: it is using : 6 processors
: in directory : /scratch/graziano
CPUS DIM1 = 3
CPUS DIM2 = 2
Reading model namelist file
Using default microphysical parameter.
Initial date of the global simulation: 1900-01-01 00:00:00 UTC
Initial date of this run : 1900-01-01 00:00:00 UTC
[...]
A lot of usually fast printout .... ;)
[...]
ATM variables written at 1900-01-01 03:00:00 UTC
SRF variables written at 1900-01-01 03:00:00 UTC
RAD variables written at 1900-01-01 03:00:00 UTC
$$$ 1900-01-01 03:00:00 UTC
$$$ max, min of ps (mb) = 1016.98 1016.27
ATM variables written at 1900-01-01 06:00:00 UTC
SRF variables written at 1900-01-01 06:00:00 UTC
RAD variables written at 1900-01-01 06:00:00 UTC
$$$ 1900-01-01 06:00:00 UTC
$$$ max, min of ps (mb) = 1017.45 1016.89
ATM variables written at 1900-01-01 09:00:00 UTC
SRF variables written at 1900-01-01 09:00:00 UTC
RAD variables written at 1900-01-01 09:00:00 UTC
$$$ 1900-01-01 09:00:00 UTC
$$$ max, min of ps (mb) = 1017.85 1017.39
[...]
A lot of repetitive printouts....
[...]
: this run stops at : YYYY-MM-DD HH:MM:SS+ZZZZ
: Run has been completed using 6 processors.
: Total elapsed seconds of run : xxx.xxxxxxxxxx
RegCM V5 simulation successfully reached end
The above diagnostic printout of the surface pressure readings from the model internal status in hPa should show a constant pressure increase throughout the model run of about 10 hPa (mb) per month due to the radiative cooling of the atmosphere.
Tasks and Submissions
To practice with the model, a standard Linux desktop with almost any distribution is enough, but you should use a reduced domain setting by running the model using a different input file, nominally:
$REGCM_ROOT/Testing/isc24_small.in
The above input file will run a much smaller simulation, which concludes in some minutes on my 6 core desktop. For convenience, on a clean Ubuntu installation, the required packages to compile the model using GNU gcc compilers are:
build-essential gfortran libopenmpi-dev libnetcdff-dev
The expected tasks for the competition are:
Build and Run the application with the given input isc24.inc using 4 CPU nodes, submit the best performance to the team’s folder.
Run IPM or another MPI profiler and show the most 3 MPI calls being used, show your work in the teams presentation.
Visualize the input netCDF files and create video or set of photos based on that using any tool. show your work in the teams presentation. The netCDF output data should contain all the metadata required to use most of the visualization packages.
4. Bonus task: Try to optimize the code of the micro physics package in Main/microlib/mod_micro_nogtom.F90 and show your work in the teams presentation.
Add Comment